Function reference • VCFtoGWAS

All functions

allele_presence_plot(): Allele presence correlating to feature

Build_offspring_GWAS_matrix(): Build a GWAS matrix for the offspring

Create_complete_snp_data(): Create Complete SNP data

create_directory(): Create a directory

create_SacCer_sgd_cds(): Create SacCer_sgd_cds file for complete SNP info

expand_files(): Expand rows of files

Filter_genotypes(): Filter the genotypes (strains)

name_by_time(): Create name by time stamp

show_suggested_data_structure(): Show (print) suggested results structure

Upload_vcf_to_R(): Turn vcf files to usable R files