Trait distribution per SNP alleles

The function creates a plot. The plot is used to visually asses how the presence of an allele (with a certain SNP) correlates to the examined feature

Usage

allele_presence_plot(gData, GWAS, GWAS_trial_name, checked_trait)

Arguments

gData

gData object relating to the GWAS object (from statgenGWAS)

GWAS

GWAS results (from statgenGWAS)

GWAS_trial_name

Name of trial of interest

checked_trait

Name of trait of interest

Value

A plot object is returned

References

For a visual example, go to the relevant section in the package website

Author

Tomer Antman

Note

If the checked_trait has the word "bin" in it, the function will treat it as categorized